Imaging Resources

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Tract Tracing Basics

• Anterograde Tracing, according to Wikipedia

• A Student's Guide to Neural Circuit Tracing

• A fourth generation of neuroanatomical tracing techniques: exploiting the offspring of genetic engineering

• Neuroanatomy: Cajal and after Cajal

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Spinning Disk Microscope

• Basic Instructions

• Stim-pulse-repeat protocol

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SlideBook (Acquisition/Analysis)

• SlideBook Download

• Getting Started With SlideBook 6

• Full Slidebook Manual

• Getting files into MATLAB

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Imaging Analysis Tools

• Mesmerize

  • What's Mesmerize?

  • Mesmerize Website

  • Uses CaImAn Motion Correction Algorithm

    • What's CaImAn?

  • A few tutorials from our very own Lucy Zuo:

    • A basic example using Mesmerize

    • Jupyter Notebook to Matlab

• FluoroSNNAP

  • What's FluoroSNNAP?

  • FluoroSNNAP User Guide

• CorelDraw

  • How to overlay an image with an atlas map

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