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    Imaging Resources

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    Tract Tracing Basics

    • Anterograde Tracing, according to Wikipedia

    • A Student's Guide to Neural Circuit Tracing

    • A fourth generation of neuroanatomical tracing techniques: exploiting the offspring of genetic engineering

    • Neuroanatomy: Cajal and after Cajal

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    Spinning Disk Microscope

    • Basic Instructions

    • Stim-pulse-repeat protocol

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    SlideBook (Acquisition/Analysis)

    • SlideBook Download

    • Getting Started With SlideBook 6

    • Full Slidebook Manual

    • Getting files into MATLAB

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    Imaging Analysis Tools

    • Mesmerize

      • What's Mesmerize?

      • Mesmerize Website

      • Uses CaImAn Motion Correction Algorithm

        • What's CaImAn?

      • A few tutorials from our very own Lucy Zuo:

        • A basic example using Mesmerize

        • Jupyter Notebook to Matlab

    • FluoroSNNAP

      • What's FluoroSNNAP?

      • FluoroSNNAP User Guide

    • CorelDraw

      • How to overlay an image with an atlas map

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    You can find the Beenhakker Lab in 5058 Pinn Hall

    The University of Virginia School of Medicine

    Charlottesville, VA 22908

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    Questions? Email Mark: markbeen@virginia.edu

    © 2022 by the Beenhakker Lab