Computational Resources

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 Helpful Guides & Resources

• Server, Linux, Command Line

  • Start Here (thanks, Adam) 

  • Connect to the Server 

  • Common UNIX Commands 

  • Custom Scripts and Commands 

  • Custom Aliases 

  • Shell script syntax 

  • SLURM script syntax 

  • Setfacl to change permissions

    • ​ for a single file:

      • setfacl –b filename

    • for a directory:

      • setfacl -R -m u:username:rwX directory​

  • Can't get samba or webmin to connect? Try:

    • sudo iptables -I INPUT 1 -p tcp --dport XXX -j ACCEPT​

      • for samba, XXX should be set to 445​

      • for webmin, XXX should be set to 10000

  • VNC not working? Try this.

    • Also, establish a new session by running:​

      • vncserver -geometry 7000x1900 -localhost no :1​

        • You explicitly define a session you want (must be available) with the no:X argument.​

        • You can still pass in the geometry argument to define session size.

      • You will very likely need to edit your /home/user/.vnc/xstartup file to reflect what you find here.

• Matlab

  • Start Here 

  • Common MATLAB functions 

  • Blab guide to writing functions 

• Anaconda, Python, R, Jupyter

  • Start Here 

  • Common R functions 

  • R script syntax 

• Markdown

  • Start Here 

  • Markdown CheatSheet  

• Sublime Text

  • Start here 

  • Sublime Text 3 Keyboard Shortcuts  

• Website (old)

  • Start Here

  • Instructions for updating website 

• Chrome  

• NEURON

 

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Matlab Code We've Written

Note: Only the list of functions and one-line descriptions are publically accessible.

To view the scripts themselves, one must sign in to a GitHub account that is part of

the blabuva group.

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• Adam's Functions

• Alex's Functions 

• Ashley's Functions 

• Brian's Functions 

• Craig's Functions 

• Downloaded Functions 

• Justin's Functions 

• Katie's Functions 

• Koji's Functions 

• Lise's Functions 

• Mark's Functions 

• Matt's Functions 

• Mira's Functions

• Peter's Functions 

• Sami's Functions 

• GUIs 

• Spike-Wave Detection GUI 

• minEASE

  

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Blab GitHub Repositories

Note: You must create a GitHub account and join blabuva to access private repositories. If you see 404, just sign in on the upper right corner.

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• blabuva GitHub 

• Linux Settings, Tutorials and FAQ 

• Matlab Settings, Tutorials and FAQ 

• Anaconda Settings, Tutorials and FAQ 

• Markdown Settings, Tutorials and FAQ 

• Sublime Text Settings, Tutorials and FAQ 

• Website Settings, Tutorials and FAQ 

• Chrome Settings, Tutorials and FAQ 

• Windows Settings, Tutorials and FAQ 

• Neuron Settings, Tutorials and FAQ 

• Xolotl Settings, Tutorials and FAQ 

• AWS Settings, Tutorials and FAQ  

  • AWS Console